(position-specific scoring matrix) or PWM (position weight matrix), how a sequence logo can be made from a PSSM/PWM, and what the logo in Figure 1 tells us about the binding motif. You do not need to use formulas. (10 p)
Figur 1 – Sekvenslogo / Figure 1 – Sequence logo
Mange av de patogene egenskapene til Listeria examinensis ser ut til å være knyttet til de proteinene som uttrykkes ved økt temperatur. Du vil derfor predikere viktige egenskaper for disse proteinene.
Forklar hva som menes med en amfifatisk heliks. (10 p)
(sekvens til struktur og struktur til struktur) fungerer. (10 p)
Problem 4 – Protein properties (25 p)
Many of the pathogenic properties of Listeria examinensis seem to be linked to the proteins that are expressed at increased temperature. Therefore you want to predict important properties for these proteins.
Explain what we mean by an amphipathic helix. (10 p)
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